J5_8Y0U_006
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- UUGAC*GUUUG*CA*UG*CAGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8Y0U|1|C1|G|2418, 8Y0U|1|C1|A|2799, 8Y0U|1|C1|G|2800, 8Y0U|1|C1|A|2801, 8Y0U|1|C1|A|2802, 8Y0U|1|C1|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y0U|1|C1|U|2416
8Y0U|1|C1|U|2417
8Y0U|1|C1|G|2418
8Y0U|1|C1|A|2419
8Y0U|1|C1|C|2420
*
8Y0U|1|C1|G|2610
8Y0U|1|C1|U|2611
8Y0U|1|C1|U|2612
8Y0U|1|C1|U|2613
8Y0U|1|C1|G|2614
*
8Y0U|1|C1|C|2627
8Y0U|1|C1|A|2628
*
8Y0U|1|C1|U|2650
8Y0U|1|C1|G|2651
*
8Y0U|1|C1|C|2798
8Y0U|1|C1|A|2799
8Y0U|1|C1|G|2800
8Y0U|1|C1|A|2801
8Y0U|1|C1|A|2802
8Y0U|1|C1|A|2803
8Y0U|1|C1|A|2804
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain 5
- Eukaryotic translation initiation factor 5A-1
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42A
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