Loop J5_8Y0U

3D structure

PDB id: 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description: dormant ribosome with STM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å

Loop

Sequence: CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
Length: 48 nucleotides
Bulged bases: 8Y0U|1|C2|A|541, 8Y0U|1|C2|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8Y0U|1|C2|C|31
8Y0U|1|C2|U|32
8Y0U|1|C2|U|33
8Y0U|1|C2|G|34
8Y0U|1|C2|U|35
8Y0U|1|C2|C|36
8Y0U|1|C2|U|37
8Y0U|1|C2|C|38
8Y0U|1|C2|A|39
8Y0U|1|C2|A|40
8Y0U|1|C2|A|41
*
8Y0U|1|C2|U|466
8Y0U|1|C2|G|467
8Y0U|1|C2|A|468
8Y0U|1|C2|C|469
8Y0U|1|C2|A|470
8Y0U|1|C2|A|471
8Y0U|1|C2|U|472
8Y0U|1|C2|A|473
8Y0U|1|C2|A|474
8Y0U|1|C2|A|475
8Y0U|1|C2|U|476
8Y0U|1|C2|A|477
8Y0U|1|C2|A|478
8Y0U|1|C2|C|479
*
8Y0U|1|C2|G|509
8Y0U|1|C2|G|510
8Y0U|1|C2|A|511
8Y0U|1|C2|A|512
8Y0U|1|C2|U|513
8Y0U|1|C2|G|514
8Y0U|1|C2|A|515
8Y0U|1|C2|G|516
*
8Y0U|1|C2|C|536
8Y0U|1|C2|G|537
8Y0U|1|C2|A|538
8Y0U|1|C2|G|539
8Y0U|1|C2|G|540
8Y0U|1|C2|A|541
8Y0U|1|C2|A|542
8Y0U|1|C2|C|543
8Y0U|1|C2|A|544
8Y0U|1|C2|A|545
8Y0U|1|C2|U|546
*
8Y0U|1|C2|A|592
8Y0U|1|C2|U|593
8Y0U|1|C2|A|594
8Y0U|1|C2|G|595

Current chains

Chain C2: 18S rRNA

Nearby chains

Chain SE: 40S ribosomal protein S4-A
Chain SJ: 40S ribosomal protein S9-A
Chain SX: 40S ribosomal protein S23-A
Chain SY: 40S ribosomal protein S24-A
Chain Se: 40S ribosomal protein S30-A

J5_8Y0U_008