J5_8Y0U_010

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

8Y0U|1|C2|U|128, 8Y0U|1|C2|C|130, 8Y0U|1|C2|U|132, 8Y0U|1|C2|U|134, 8Y0U|1|C2|A|135, 8Y0U|1|C2|A|140, 8Y0U|1|C2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0U|1|C2|A|124
8Y0U|1|C2|U|125
8Y0U|1|C2|A|126
8Y0U|1|C2|G|127
8Y0U|1|C2|U|128
8Y0U|1|C2|U|129
8Y0U|1|C2|C|130
8Y0U|1|C2|C|131
8Y0U|1|C2|U|132
8Y0U|1|C2|U|133
8Y0U|1|C2|U|134
8Y0U|1|C2|A|135
8Y0U|1|C2|C|136
8Y0U|1|C2|U|137
8Y0U|1|C2|A|138
8Y0U|1|C2|C|139
8Y0U|1|C2|A|140
8Y0U|1|C2|U|141
8Y0U|1|C2|G|142
8Y0U|1|C2|G|143
*
8Y0U|1|C2|C|172
8Y0U|1|C2|A|173
8Y0U|1|C2|U|174
8Y0U|1|C2|G|175
8Y0U|1|C2|C|176
8Y0U|1|C2|U|177
8Y0U|1|C2|U|178
8Y0U|1|C2|A|179
8Y0U|1|C2|A|180
8Y0U|1|C2|A|181
8Y0U|1|C2|A|182
*
8Y0U|1|C2|U|203
8Y0U|1|C2|G|204
*
8Y0U|1|C2|C|263
8Y0U|1|C2|G|264
8Y0U|1|C2|A|265
*
8Y0U|1|C2|U|289
8Y0U|1|C2|G|290
8Y0U|1|C2|G|291
8Y0U|1|C2|U|292
8Y0U|1|C2|U|293

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A