J5_8Y0U_012

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

8Y0U|1|C2|U|639, 8Y0U|1|C2|U|694, 8Y0U|1|C2|C|696, 8Y0U|1|C2|C|697, 8Y0U|1|C2|U|813, 8Y0U|1|C2|G|815, 8Y0U|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0U|1|C2|A|636
8Y0U|1|C2|C|637
8Y0U|1|C2|U|638
8Y0U|1|C2|U|639
8Y0U|1|C2|U|640
8Y0U|1|C2|G|641
*
8Y0U|1|C2|U|693
8Y0U|1|C2|U|694
8Y0U|1|C2|U|695
8Y0U|1|C2|C|696
8Y0U|1|C2|C|697
8Y0U|1|C2|U|698
8Y0U|1|C2|U|699
*
8Y0U|1|C2|G|739
8Y0U|1|C2|A|740
8Y0U|1|C2|C|741
8Y0U|1|C2|U|742
8Y0U|1|C2|U|743
8Y0U|1|C2|U|744
*
8Y0U|1|C2|A|807
8Y0U|1|C2|U|808
8Y0U|1|C2|A|809
8Y0U|1|C2|G|810
8Y0U|1|C2|A|811
8Y0U|1|C2|A|812
8Y0U|1|C2|U|813
8Y0U|1|C2|A|814
8Y0U|1|C2|G|815
8Y0U|1|C2|G|816
8Y0U|1|C2|A|817
*
8Y0U|1|C2|U|854
8Y0U|1|C2|A|855
8Y0U|1|C2|A|856
8Y0U|1|C2|U|857
8Y0U|1|C2|G|858
8Y0U|1|C2|A|859
8Y0U|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

Small ribosomal subunit protein uS17A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A