J5_8Y0U_014

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

8Y0U|1|C1|G|2418, 8Y0U|1|C1|A|2799, 8Y0U|1|C1|G|2800, 8Y0U|1|C1|A|2801, 8Y0U|1|C1|A|2802, 8Y0U|1|C1|A|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Y0U_014 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.2735

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08912.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|U|2416
8Y0U|1|C1|U|2417
8Y0U|1|C1|G|2418
8Y0U|1|C1|A|2419
*
8Y0U|1|C1|U|2611
8Y0U|1|C1|U|2612
8Y0U|1|C1|U|2613
8Y0U|1|C1|G|2614
*
8Y0U|1|C1|C|2627
8Y0U|1|C1|A|2628
*
8Y0U|1|C1|U|2650
8Y0U|1|C1|G|2651
*
8Y0U|1|C1|C|2798
8Y0U|1|C1|A|2799
8Y0U|1|C1|G|2800
8Y0U|1|C1|A|2801
8Y0U|1|C1|A|2802
8Y0U|1|C1|A|2803
8Y0U|1|C1|A|2804

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A-1

Chain LA

Large ribosomal subunit protein uL2A

Chain LN

Large ribosomal subunit protein eL15A

Chain LQ

Large ribosomal subunit protein eL18A

Chain LT

Large ribosomal subunit protein eL21A

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

Large ribosomal subunit protein eL42A