J5_8Y0X_002
3D structure
- PDB id
- 8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dormant ribosome with SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 8Y0X|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y0X|1|L5|U|20
8Y0X|1|L5|G|21
*
8Y0X|1|L8|C|35
8Y0X|1|L8|G|36
8Y0X|1|L8|A|37
8Y0X|1|L8|U|38
8Y0X|1|L8|G|39
8Y0X|1|L8|A|40
8Y0X|1|L8|A|41
8Y0X|1|L8|G|42
*
8Y0X|1|L8|C|101
8Y0X|1|L8|G|102
8Y0X|1|L8|A|103
8Y0X|1|L8|A|104
8Y0X|1|L8|C|105
8Y0X|1|L8|G|106
*
8Y0X|1|L8|C|113
8Y0X|1|L8|G|114
*
8Y0X|1|L8|U|136
8Y0X|1|L8|A|137
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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