J5_8Y0X_006

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU

Length

42 nucleotides

Bulged bases

8Y0X|1|L5|A|3908, 8Y0X|1|L5|A|4394, 8Y0X|1|L5|U|4450, 8Y0X|1|L5|G|4451, 8Y0X|1|L5|U|4555, 8Y0X|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|A|3902
8Y0X|1|L5|A|3903
8Y0X|1|L5|G|3904
8Y0X|1|L5|A|3905
8Y0X|1|L5|A|3906
8Y0X|1|L5|G|3907
8Y0X|1|L5|A|3908
8Y0X|1|L5|C|3909
8Y0X|1|L5|C|3910
*
8Y0X|1|L5|G|4392
8Y0X|1|L5|G|4393
8Y0X|1|L5|A|4394
8Y0X|1|L5|U|4395
8Y0X|1|L5|A|4396
8Y0X|1|L5|A|4397
8Y0X|1|L5|C|4398
8Y0X|1|L5|U|4399
8Y0X|1|L5|G|4400
*
8Y0X|1|L5|C|4444
8Y0X|1|L5|U|4445
8Y0X|1|L5|U|4446
8Y0X|1|L5|C|4447
8Y0X|1|L5|G|4448
8Y0X|1|L5|A|4449
8Y0X|1|L5|U|4450
8Y0X|1|L5|G|4451
8Y0X|1|L5|U|4452
8Y0X|1|L5|C|4453
*
8Y0X|1|L5|G|4528
8Y0X|1|L5|G|4529
8Y0X|1|L5|U|4530
8Y0X|1|L5|U|4531
8Y0X|1|L5|U|4532
8Y0X|1|L5|A|4533
8Y0X|1|L5|G|4534
*
8Y0X|1|L5|U|4552
8Y0X|1|L5|A|4553
8Y0X|1|L5|G|4554
8Y0X|1|L5|U|4555
8Y0X|1|L5|U|4556
8Y0X|1|L5|U|4557
8Y0X|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L29