J5_8Y0X_010

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

8Y0X|1|S2|G|126, 8Y0X|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|S2|C|125
8Y0X|1|S2|G|126
8Y0X|1|S2|C|127
8Y0X|1|S2|U|128
8Y0X|1|S2|C|129
*
8Y0X|1|S2|G|183
8Y0X|1|S2|G|184
8Y0X|1|S2|G|185
*
8Y0X|1|S2|U|214
8Y0X|1|S2|G|215
*
8Y0X|1|S2|C|310
8Y0X|1|S2|C|311
8Y0X|1|S2|G|312
*
8Y0X|1|S2|C|337
8Y0X|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6