J5_8Y36_005
3D structure
- PDB id
- 8Y36 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8Y36|1|A|A|2089, 8Y36|1|A|A|2475, 8Y36|1|A|U|2476, 8Y36|1|A|U|2533, 8Y36|1|A|U|2612, 8Y36|1|A|U|2636
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y36|1|A|G|2084
8Y36|1|A|A|2085
8Y36|1|A|A|2086
8Y36|1|A|A|2087
8Y36|1|A|G|2088
8Y36|1|A|A|2089
8Y36|1|A|C|2090
8Y36|1|A|C|2091
*
8Y36|1|A|G|2473
8Y36|1|A|G|2474
8Y36|1|A|A|2475
8Y36|1|A|U|2476
8Y36|1|A|A|2477
8Y36|1|A|A|2478
8Y36|1|A|C|2479
8Y36|1|A|A|2480
*
8Y36|1|A|U|2527
8Y36|1|A|C|2528
8Y36|1|A|G|2529
8Y36|1|A|2MA|2530
8Y36|1|A|U|2531
8Y36|1|A|G|2532
8Y36|1|A|U|2533
8Y36|1|A|C|2534
*
8Y36|1|A|G|2609
8Y36|1|A|G|2610
8Y36|1|A|U|2611
8Y36|1|A|U|2612
8Y36|1|A|C|2613
8Y36|1|A|A|2614
8Y36|1|A|G|2615
*
8Y36|1|A|C|2633
8Y36|1|A|G|2634
8Y36|1|A|G|2635
8Y36|1|A|U|2636
8Y36|1|A|C|2637
8Y36|1|A|C|2638
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- Large ribosomal subunit protein uL3
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
- Chain K
- Large ribosomal subunit protein uL16
- Chain Q
- Large ribosomal subunit protein uL22
- Chain Z
- Large ribosomal subunit protein bL32
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