J5_8Y38_006
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUGG*CGUG*CUGUUA*UCAGAAAG*CAAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|a|C|37
8Y38|1|a|U|38
8Y38|1|a|G|39
8Y38|1|a|G|40
*
8Y38|1|a|C|411
8Y38|1|a|G|412
8Y38|1|a|U|413
8Y38|1|a|G|414
*
8Y38|1|a|C|444
8Y38|1|a|U|445
8Y38|1|a|G|446
8Y38|1|a|U|447
8Y38|1|a|U|448
8Y38|1|a|A|449
*
8Y38|1|a|U|501
8Y38|1|a|C|502
8Y38|1|a|A|503
8Y38|1|a|G|504
8Y38|1|a|A|505
8Y38|1|a|A|506
8Y38|1|a|A|507
8Y38|1|a|G|508
*
8Y38|1|a|C|553
8Y38|1|a|A|554
8Y38|1|a|A|555
8Y38|1|a|G|556
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
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