J5_8Y39_001

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8Y39|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Y39_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.14

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8Y39|1|A|C|47
8Y39|1|A|G|48
8Y39|1|A|A|49
8Y39|1|A|U|50
8Y39|1|A|G|51
8Y39|1|A|A|52
8Y39|1|A|A|53
8Y39|1|A|G|54
*
8Y39|1|A|C|115
8Y39|1|A|G|116
8Y39|1|A|A|117
8Y39|1|A|A|118
8Y39|1|A|U|119
8Y39|1|A|G|120
*
8Y39|1|A|C|129
8Y39|1|A|A|130
*
8Y39|1|A|U|149
8Y39|1|A|A|150
8Y39|1|A|U|151
*
8Y39|1|A|A|178
8Y39|1|A|A|179
8Y39|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34