J5_8Y39_002
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8Y39|1|A|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y39_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0785
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|A|C|627
8Y39|1|A|G|628
8Y39|1|A|A|629
8Y39|1|A|G|630
8Y39|1|A|U|631
8Y39|1|A|U|632
*
8Y39|1|A|A|713
8Y39|1|A|G|714
8Y39|1|A|A|715
8Y39|1|A|C|716
*
8Y39|1|A|G|854
8Y39|1|A|U|855
8Y39|1|A|U|856
8Y39|1|A|C|857
*
8Y39|1|A|G|1234
8Y39|1|A|C|1235
*
8Y39|1|A|G|1288
8Y39|1|A|A|1289
8Y39|1|A|G|1290
8Y39|1|A|A|1291
8Y39|1|A|A|1292
8Y39|1|A|U|1293
8Y39|1|A|G|1294
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
- Chain O
- Large ribosomal subunit protein bL20
- Chain P
- Large ribosomal subunit protein bL21
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