J5_8Y39_007
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8Y39|1|a|A|108, 8Y39|1|a|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y39_007 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0984
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|C|59
8Y39|1|a|A|60
8Y39|1|a|A|61
8Y39|1|a|G|62
*
8Y39|1|a|C|105
8Y39|1|a|G|106
8Y39|1|a|G|107
8Y39|1|a|A|108
8Y39|1|a|C|109
8Y39|1|a|G|110
8Y39|1|a|G|111
8Y39|1|a|G|112
*
8Y39|1|a|C|322
8Y39|1|a|A|323
8Y39|1|a|C|324
*
8Y39|1|a|G|345
8Y39|1|a|A|346
8Y39|1|a|C|347
*
8Y39|1|a|G|358
8Y39|1|a|G|359
8Y39|1|a|C|360
8Y39|1|a|A|361
8Y39|1|a|G|362
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL14
- Chain p
- Small ribosomal subunit protein bS16
- Chain t
- Small ribosomal subunit protein bS20
Coloring options: