J5_8YDF_002
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAG*CGUACCU*AUGGG*CAUAAGUAA*UGAAAUUG
- Length
- 32 nucleotides
- Bulged bases
- 8YDF|1|1|A|532, 8YDF|1|1|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|531
8YDF|1|1|A|532
8YDF|1|1|G|533
*
8YDF|1|1|C|560
8YDF|1|1|G|561
8YDF|1|1|U|562
8YDF|1|1|A|563
8YDF|1|1|C|564
8YDF|1|1|C|565
8YDF|1|1|U|566
*
8YDF|1|1|A|575
8YDF|1|1|U|576
8YDF|1|1|G|577
8YDF|1|1|G|578
8YDF|1|1|G|579
*
8YDF|1|1|C|1261
8YDF|1|1|A|1262
8YDF|1|1|U|1263
8YDF|1|1|A|1264
8YDF|1|1|A|1265
8YDF|1|1|G|1266
8YDF|1|1|U|1267
8YDF|1|1|A|1268
8YDF|1|1|A|1269
*
8YDF|1|1|U|2011
8YDF|1|1|G|2012
8YDF|1|1|A|2013
8YDF|1|1|A|2014
8YDF|1|1|A|2015
8YDF|1|1|U|2016
8YDF|1|1|U|2017
8YDF|1|1|G|2018
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L22
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