J5_8YDF_004
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8YDF|1|1|U|1758, 8YDF|1|1|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|G|1674
8YDF|1|1|C|1675
8YDF|1|1|A|1676
8YDF|1|1|A|1677
8YDF|1|1|A|1678
8YDF|1|1|A|1679
8YDF|1|1|U|1680
8YDF|1|1|G|1681
8YDF|1|1|G|1682
*
8YDF|1|1|C|1706
8YDF|1|1|G|1707
*
8YDF|1|1|U|1751
8YDF|1|1|C|1752
*
8YDF|1|1|G|1756
8YDF|1|1|A|1757
8YDF|1|1|U|1758
8YDF|1|1|A|1759
8YDF|1|1|C|1760
8YDF|1|1|C|1761
8YDF|1|1|A|1762
8YDF|1|1|G|1763
8YDF|1|1|C|1764
*
8YDF|1|1|G|1988
8YDF|1|1|G|1989
8YDF|1|1|C|1990
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
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