J5_8YDF_005
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8YDF|1|1|A|2062, 8YDF|1|1|A|2448, 8YDF|1|1|U|2449, 8YDF|1|1|U|2609, 8YDF|1|1|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|G|2057
8YDF|1|1|A|2058
8YDF|1|1|A|2059
8YDF|1|1|A|2060
8YDF|1|1|G|2061
8YDF|1|1|A|2062
8YDF|1|1|C|2063
8YDF|1|1|C|2064
*
8YDF|1|1|G|2446
8YDF|1|1|G|2447
8YDF|1|1|A|2448
8YDF|1|1|U|2449
8YDF|1|1|A|2450
8YDF|1|1|A|2451
8YDF|1|1|C|2452
8YDF|1|1|A|2453
*
8YDF|1|1|U|2500
8YDF|1|1|C|2501
8YDF|1|1|G|2502
8YDF|1|1|A|2503
8YDF|1|1|U|2504
8YDF|1|1|G|2505
8YDF|1|1|U|2506
8YDF|1|1|C|2507
*
8YDF|1|1|G|2582
8YDF|1|1|G|2583
8YDF|1|1|U|2584
8YDF|1|1|U|2585
8YDF|1|1|U|2586
8YDF|1|1|A|2587
8YDF|1|1|G|2588
*
8YDF|1|1|C|2606
8YDF|1|1|G|2607
8YDF|1|1|G|2608
8YDF|1|1|U|2609
8YDF|1|1|C|2610
8YDF|1|1|C|2611
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L32
- Chain b
- 50S ribosomal protein L2
- Chain c
- 50S ribosomal protein L3
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L22
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