J5_8YDJ_006
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8YDJ|1|1|U|2076, 8YDJ|1|1|G|2428, 8YDJ|1|1|G|2429, 8YDJ|1|1|A|2430, 8YDJ|1|1|U|2431
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|1|U|2074
8YDJ|1|1|U|2075
8YDJ|1|1|U|2076
8YDJ|1|1|A|2077
*
8YDJ|1|1|U|2243
8YDJ|1|1|U|2244
8YDJ|1|1|U|2245
8YDJ|1|1|G|2246
*
8YDJ|1|1|C|2258
8YDJ|1|1|U|2259
*
8YDJ|1|1|A|2281
8YDJ|1|1|G|2282
*
8YDJ|1|1|C|2427
8YDJ|1|1|G|2428
8YDJ|1|1|G|2429
8YDJ|1|1|A|2430
8YDJ|1|1|U|2431
8YDJ|1|1|A|2432
8YDJ|1|1|A|2433
8YDJ|1|1|A|2434
8YDJ|1|1|A|2435
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
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