Loop J5_8YLD

3D structure

PDB id: 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description: State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 8YLD|1|2|U|128, 8YLD|1|2|C|131, 8YLD|1|2|U|132, 8YLD|1|2|U|133, 8YLD|1|2|U|134, 8YLD|1|2|A|135, 8YLD|1|2|A|140, 8YLD|1|2|U|141, 8YLD|1|2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YLD|1|2|A|124
8YLD|1|2|U|125
8YLD|1|2|A|126
8YLD|1|2|G|127
8YLD|1|2|U|128
8YLD|1|2|U|129
8YLD|1|2|C|130
8YLD|1|2|C|131
8YLD|1|2|U|132
8YLD|1|2|U|133
8YLD|1|2|U|134
8YLD|1|2|A|135
8YLD|1|2|C|136
8YLD|1|2|U|137
8YLD|1|2|A|138
8YLD|1|2|C|139
8YLD|1|2|A|140
8YLD|1|2|U|141
8YLD|1|2|G|142
8YLD|1|2|G|143
*
8YLD|1|2|C|172
8YLD|1|2|A|173
8YLD|1|2|U|174
8YLD|1|2|G|175
8YLD|1|2|C|176
8YLD|1|2|U|177
8YLD|1|2|U|178
8YLD|1|2|A|179
8YLD|1|2|A|180
8YLD|1|2|A|181
8YLD|1|2|A|182
*
8YLD|1|2|U|203
8YLD|1|2|G|204
*
8YLD|1|2|C|263
8YLD|1|2|G|264
8YLD|1|2|A|265
8YLD|1|2|A|266
8YLD|1|2|U|267
*
8YLD|1|2|A|288
8YLD|1|2|U|289
8YLD|1|2|G|290
8YLD|1|2|G|291
8YLD|1|2|U|292
8YLD|1|2|U|293

Current chains

Chain 2: 18S rRNA

Nearby chains

Chain SS: Small ribosomal subunit protein eS4A
Chain ST: Small ribosomal subunit protein eS6A
Chain SV: Small ribosomal subunit protein eS8A

J5_8YLD_005