J5_8YLD_006
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 8YLD|1|2|U|639, 8YLD|1|2|U|694, 8YLD|1|2|C|696, 8YLD|1|2|C|697, 8YLD|1|2|U|742, 8YLD|1|2|U|813, 8YLD|1|2|G|815, 8YLD|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|2|A|636
8YLD|1|2|C|637
8YLD|1|2|U|638
8YLD|1|2|U|639
8YLD|1|2|U|640
8YLD|1|2|G|641
*
8YLD|1|2|U|693
8YLD|1|2|U|694
8YLD|1|2|U|695
8YLD|1|2|C|696
8YLD|1|2|C|697
8YLD|1|2|U|698
8YLD|1|2|U|699
*
8YLD|1|2|G|739
8YLD|1|2|A|740
8YLD|1|2|C|741
8YLD|1|2|U|742
8YLD|1|2|U|743
8YLD|1|2|U|744
*
8YLD|1|2|A|807
8YLD|1|2|U|808
8YLD|1|2|A|809
8YLD|1|2|G|810
8YLD|1|2|A|811
8YLD|1|2|A|812
8YLD|1|2|U|813
8YLD|1|2|A|814
8YLD|1|2|G|815
8YLD|1|2|G|816
8YLD|1|2|A|817
*
8YLD|1|2|U|854
8YLD|1|2|A|855
8YLD|1|2|A|856
8YLD|1|2|U|857
8YLD|1|2|G|858
8YLD|1|2|A|859
8YLD|1|2|U|860
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain T
- Large ribosomal subunit protein eL19A
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