J5_8YLD_007
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAGG*CGAUGAAG*UGAACG*CG*CAUG
- Length
- 24 nucleotides
- Bulged bases
- 8YLD|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|U|19
8YLD|1|A|A|20
8YLD|1|A|G|21
8YLD|1|A|G|22
*
8YLD|1|C|C|35
8YLD|1|C|G|36
8YLD|1|C|A|37
8YLD|1|C|U|38
8YLD|1|C|G|39
8YLD|1|C|A|40
8YLD|1|C|A|41
8YLD|1|C|G|42
*
8YLD|1|C|U|102
8YLD|1|C|G|103
8YLD|1|C|A|104
8YLD|1|C|A|105
8YLD|1|C|C|106
8YLD|1|C|G|107
*
8YLD|1|C|C|115
8YLD|1|C|G|116
*
8YLD|1|C|C|137
8YLD|1|C|A|138
8YLD|1|C|U|139
8YLD|1|C|G|140
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- Large ribosomal subunit protein uL29A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: