3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUUC*GGUUAGUCGAUC*GGAAU*AACC*GGUCGUAC
Length
34 nucleotides
Bulged bases
8YLD|1|A|U|1523, 8YLD|1|A|A|1593, 8YLD|1|A|A|1594
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8YLD|1|A|G|1492
8YLD|1|A|G|1493
8YLD|1|A|U|1494
8YLD|1|A|U|1495
8YLD|1|A|C|1496
*
8YLD|1|A|G|1520
8YLD|1|A|G|1521
8YLD|1|A|U|1522
8YLD|1|A|U|1523
8YLD|1|A|A|1524
8YLD|1|A|G|1525
8YLD|1|A|U|1526
8YLD|1|A|C|1527
8YLD|1|A|G|1528
8YLD|1|A|A|1529
8YLD|1|A|U|1530
8YLD|1|A|C|1531
*
8YLD|1|A|G|1591
8YLD|1|A|G|1592
8YLD|1|A|A|1593
8YLD|1|A|A|1594
8YLD|1|A|U|1595
*
8YLD|1|A|A|1612
8YLD|1|A|A|1613
8YLD|1|A|C|1614
8YLD|1|A|C|1615
*
8YLD|1|A|G|1829
8YLD|1|A|G|1830
8YLD|1|A|U|1831
8YLD|1|A|C|1832
8YLD|1|A|G|1833
8YLD|1|A|U|1834
8YLD|1|A|A|1835
8YLD|1|A|C|1836

Current chains

Chain A
25S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain T
Large ribosomal subunit protein eL19A
Chain Z
Large ribosomal subunit protein uL23
Chain i
Large ribosomal subunit protein eL34A
Chain l
Large ribosomal subunit protein eL37A
Chain m
Large ribosomal subunit protein eL38
Chain n
Large ribosomal subunit protein eL39

Coloring options:

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