J5_8YLD_010
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUUC*GGUUAGUCGAUC*GGAAU*AACC*GGUCGUAC
- Length
- 34 nucleotides
- Bulged bases
- 8YLD|1|A|U|1523, 8YLD|1|A|A|1593, 8YLD|1|A|A|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|G|1492
8YLD|1|A|G|1493
8YLD|1|A|U|1494
8YLD|1|A|U|1495
8YLD|1|A|C|1496
*
8YLD|1|A|G|1520
8YLD|1|A|G|1521
8YLD|1|A|U|1522
8YLD|1|A|U|1523
8YLD|1|A|A|1524
8YLD|1|A|G|1525
8YLD|1|A|U|1526
8YLD|1|A|C|1527
8YLD|1|A|G|1528
8YLD|1|A|A|1529
8YLD|1|A|U|1530
8YLD|1|A|C|1531
*
8YLD|1|A|G|1591
8YLD|1|A|G|1592
8YLD|1|A|A|1593
8YLD|1|A|A|1594
8YLD|1|A|U|1595
*
8YLD|1|A|A|1612
8YLD|1|A|A|1613
8YLD|1|A|C|1614
8YLD|1|A|C|1615
*
8YLD|1|A|G|1829
8YLD|1|A|G|1830
8YLD|1|A|U|1831
8YLD|1|A|C|1832
8YLD|1|A|G|1833
8YLD|1|A|U|1834
8YLD|1|A|A|1835
8YLD|1|A|C|1836
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- Large ribosomal subunit protein eL19A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain i
- Large ribosomal subunit protein eL34A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain m
- Large ribosomal subunit protein eL38
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: