J5_8YOO_004

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8YOO|1|L5|A|3908, 8YOO|1|L5|A|4394, 8YOO|1|L5|G|4451, 8YOO|1|L5|U|4555, 8YOO|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|A|3903
8YOO|1|L5|G|3904
8YOO|1|L5|A|3905
8YOO|1|L5|A|3906
8YOO|1|L5|G|3907
8YOO|1|L5|A|3908
8YOO|1|L5|C|3909
8YOO|1|L5|C|3910
*
8YOO|1|L5|G|4392
8YOO|1|L5|G|4393
8YOO|1|L5|A|4394
8YOO|1|L5|U|4395
8YOO|1|L5|A|4396
8YOO|1|L5|A|4397
8YOO|1|L5|C|4398
8YOO|1|L5|U|4399
8YOO|1|L5|G|4400
*
8YOO|1|L5|C|4444
8YOO|1|L5|U|4445
8YOO|1|L5|U|4446
8YOO|1|L5|C|4447
8YOO|1|L5|G|4448
8YOO|1|L5|A|4449
8YOO|1|L5|U|4450
8YOO|1|L5|G|4451
8YOO|1|L5|U|4452
8YOO|1|L5|C|4453
*
8YOO|1|L5|G|4528
8YOO|1|L5|G|4529
8YOO|1|L5|U|4530
8YOO|1|L5|U|4531
8YOO|1|L5|U|4532
8YOO|1|L5|A|4533
8YOO|1|L5|G|4534
*
8YOO|1|L5|U|4552
8YOO|1|L5|A|4553
8YOO|1|L5|G|4554
8YOO|1|L5|U|4555
8YOO|1|L5|U|4556
8YOO|1|L5|U|4557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L29