J5_8YOO_006
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOO|1|S2|C|30
8YOO|1|S2|U|31
8YOO|1|S2|U|32
8YOO|1|S2|G|33
8YOO|1|S2|U|34
*
8YOO|1|S2|A|521
8YOO|1|S2|A|522
8YOO|1|S2|A|523
8YOO|1|S2|U|524
8YOO|1|S2|A|525
8YOO|1|S2|A|526
8YOO|1|S2|C|527
*
8YOO|1|S2|G|558
8YOO|1|S2|G|559
8YOO|1|S2|A|560
8YOO|1|S2|A|561
8YOO|1|S2|U|562
8YOO|1|S2|G|563
8YOO|1|S2|A|564
8YOO|1|S2|G|565
*
8YOO|1|S2|C|585
8YOO|1|S2|G|586
8YOO|1|S2|A|587
8YOO|1|S2|G|588
8YOO|1|S2|G|589
8YOO|1|S2|A|590
8YOO|1|S2|U|591
8YOO|1|S2|C|592
8YOO|1|S2|C|593
8YOO|1|S2|A|594
8YOO|1|S2|U|595
*
8YOO|1|S2|A|641
8YOO|1|S2|U|642
8YOO|1|S2|A|643
8YOO|1|S2|G|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
Coloring options: