J5_8YOP_001
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8YOP|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YOP_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1105
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8YOP|1|L5|G|19
8YOP|1|L5|U|20
8YOP|1|L5|G|21
*
8YOP|1|L8|C|35
8YOP|1|L8|G|36
8YOP|1|L8|A|37
8YOP|1|L8|U|38
8YOP|1|L8|G|39
8YOP|1|L8|A|40
8YOP|1|L8|A|41
8YOP|1|L8|G|42
*
8YOP|1|L8|C|101
8YOP|1|L8|G|102
8YOP|1|L8|A|103
8YOP|1|L8|A|104
8YOP|1|L8|C|105
8YOP|1|L8|G|106
*
8YOP|1|L8|C|113
8YOP|1|L8|G|114
*
8YOP|1|L8|U|136
8YOP|1|L8|A|137
8YOP|1|L8|C|138
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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