J5_8YOP_003
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8YOP|1|L5|G|3620, 8YOP|1|L5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YOP_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0987
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOP|1|L5|G|2855
8YOP|1|L5|C|2856
8YOP|1|L5|A|2857
8YOP|1|L5|A|2858
8YOP|1|L5|G|2859
8YOP|1|L5|C|2860
8YOP|1|L5|C|2861
8YOP|1|L5|G|2862
8YOP|1|L5|G|2863
*
8YOP|1|L5|U|2887
8YOP|1|L5|G|2888
*
8YOP|1|L5|U|3613
8YOP|1|L5|G|3614
*
8YOP|1|L5|C|3618
8YOP|1|L5|G|3619
8YOP|1|L5|G|3620
8YOP|1|L5|A|3621
8YOP|1|L5|C|3622
8YOP|1|L5|C|3623
8YOP|1|L5|A|3624
8YOP|1|L5|G|3625
8YOP|1|L5|G|3626
*
8YOP|1|L5|C|3835
8YOP|1|L5|A|3836
8YOP|1|L5|C|3837
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: