Loop J5_8YOP

3D structure

PDB id: 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 8YOP|1|L5|A|3908, 8YOP|1|L5|A|4394, 8YOP|1|L5|G|4451, 8YOP|1|L5|U|4555, 8YOP|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YOP|1|L5|A|3902
8YOP|1|L5|A|3903
8YOP|1|L5|G|3904
8YOP|1|L5|A|3905
8YOP|1|L5|A|3906
8YOP|1|L5|G|3907
8YOP|1|L5|A|3908
8YOP|1|L5|C|3909
8YOP|1|L5|C|3910
*
8YOP|1|L5|G|4392
8YOP|1|L5|G|4393
8YOP|1|L5|A|4394
8YOP|1|L5|U|4395
8YOP|1|L5|A|4396
8YOP|1|L5|A|4397
8YOP|1|L5|C|4398
8YOP|1|L5|U|4399
8YOP|1|L5|G|4400
*
8YOP|1|L5|C|4444
8YOP|1|L5|U|4445
8YOP|1|L5|U|4446
8YOP|1|L5|C|4447
8YOP|1|L5|G|4448
8YOP|1|L5|A|4449
8YOP|1|L5|U|4450
8YOP|1|L5|G|4451
8YOP|1|L5|U|4452
8YOP|1|L5|C|4453
*
8YOP|1|L5|G|4528
8YOP|1|L5|G|4529
8YOP|1|L5|U|4530
8YOP|1|L5|U|4531
8YOP|1|L5|U|4532
8YOP|1|L5|A|4533
8YOP|1|L5|G|4534
*
8YOP|1|L5|U|4552
8YOP|1|L5|A|4553
8YOP|1|L5|G|4554
8YOP|1|L5|U|4555
8YOP|1|L5|U|4556
8YOP|1|L5|U|4557
8YOP|1|L5|U|4558

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_8YOP_004