J5_8YP6_001
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CGAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YP6_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.1728
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8YP6|1|a|C|40
8YP6|1|a|U|41
8YP6|1|a|G|42
8YP6|1|a|G|43
*
8YP6|1|a|C|403
8YP6|1|a|G|404
8YP6|1|a|U|405
8YP6|1|a|G|406
*
8YP6|1|a|C|436
8YP6|1|a|U|437
8YP6|1|a|U|438
8YP6|1|a|U|439
8YP6|1|a|C|440
*
8YP6|1|a|G|477
8YP6|1|a|A|478
8YP6|1|a|A|479
8YP6|1|a|G|480
*
8YP6|1|a|C|525
8YP6|1|a|G|526
8YP6|1|a|A|527
8YP6|1|a|G|528
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: