J5_8YUO_008

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8YUO|1|a|A|2062, 8YUO|1|a|A|2448, 8YUO|1|a|H2U|2449, 8YUO|1|a|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YUO|1|a|G|2057
8YUO|1|a|A|2058
8YUO|1|a|A|2059
8YUO|1|a|A|2060
8YUO|1|a|G|2061
8YUO|1|a|A|2062
8YUO|1|a|C|2063
8YUO|1|a|C|2064
*
8YUO|1|a|G|2446
8YUO|1|a|G|2447
8YUO|1|a|A|2448
8YUO|1|a|H2U|2449
8YUO|1|a|A|2450
8YUO|1|a|A|2451
8YUO|1|a|C|2452
8YUO|1|a|A|2453
*
8YUO|1|a|U|2500
8YUO|1|a|C|2501
8YUO|1|a|G|2502
8YUO|1|a|2MA|2503
8YUO|1|a|PSU|2504
8YUO|1|a|G|2505
8YUO|1|a|U|2506
8YUO|1|a|C|2507
*
8YUO|1|a|G|2582
8YUO|1|a|G|2583
8YUO|1|a|U|2584
8YUO|1|a|U|2585
8YUO|1|a|U|2586
8YUO|1|a|A|2587
8YUO|1|a|G|2588
*
8YUO|1|a|C|2606
8YUO|1|a|G|2607
8YUO|1|a|G|2608
8YUO|1|a|U|2609
8YUO|1|a|C|2610
8YUO|1|a|C|2611

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain X

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain d

50S ribosomal protein L3

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32