J5_8YUP_004
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 8YUP|1|a|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YUP_004 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.045
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8YUP|1|a|C|47
8YUP|1|a|G|48
8YUP|1|a|A|49
8YUP|1|a|U|50
8YUP|1|a|G|51
8YUP|1|a|A|52
8YUP|1|a|A|53
8YUP|1|a|G|54
*
8YUP|1|a|C|116
8YUP|1|a|G|117
8YUP|1|a|A|118
8YUP|1|a|A|119
8YUP|1|a|U|120
8YUP|1|a|G|121
*
8YUP|1|a|C|130
8YUP|1|a|A|131
*
8YUP|1|a|U|148
8YUP|1|a|A|149
8YUP|1|a|U|150
*
8YUP|1|a|A|176
8YUP|1|a|G|177
8YUP|1|a|G|178
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
Coloring options: