J5_8Z70_002

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAACG*UGGAAUGAG*CGAGGAACAAU*AUAG

Length

37 nucleotides

Bulged bases

8Z70|1|2|A|541, 8Z70|1|2|A|542, 8Z70|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z70|1|2|C|31
8Z70|1|2|U|32
8Z70|1|2|U|33
8Z70|1|2|G|34
8Z70|1|2|U|35
*
8Z70|1|2|A|473
8Z70|1|2|A|474
8Z70|1|2|A|475
8Z70|1|2|U|476
8Z70|1|2|A|477
8Z70|1|2|A|478
8Z70|1|2|C|479
8Z70|1|2|G|480
*
8Z70|1|2|U|508
8Z70|1|2|G|509
8Z70|1|2|G|510
8Z70|1|2|A|511
8Z70|1|2|A|512
8Z70|1|2|U|513
8Z70|1|2|G|514
8Z70|1|2|A|515
8Z70|1|2|G|516
*
8Z70|1|2|C|536
8Z70|1|2|G|537
8Z70|1|2|A|538
8Z70|1|2|G|539
8Z70|1|2|G|540
8Z70|1|2|A|541
8Z70|1|2|A|542
8Z70|1|2|C|543
8Z70|1|2|A|544
8Z70|1|2|A|545
8Z70|1|2|U|546
*
8Z70|1|2|A|592
8Z70|1|2|U|593
8Z70|1|2|A|594
8Z70|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A