J5_8Z70_005

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

8Z70|1|2|U|128, 8Z70|1|2|U|132, 8Z70|1|2|U|134, 8Z70|1|2|A|135, 8Z70|1|2|A|140, 8Z70|1|2|U|141, 8Z70|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z70|1|2|A|124
8Z70|1|2|U|125
8Z70|1|2|A|126
8Z70|1|2|G|127
8Z70|1|2|U|128
8Z70|1|2|U|129
8Z70|1|2|C|130
8Z70|1|2|C|131
8Z70|1|2|U|132
8Z70|1|2|U|133
8Z70|1|2|U|134
8Z70|1|2|A|135
8Z70|1|2|C|136
8Z70|1|2|U|137
8Z70|1|2|A|138
8Z70|1|2|C|139
8Z70|1|2|A|140
8Z70|1|2|U|141
8Z70|1|2|G|142
8Z70|1|2|G|143
*
8Z70|1|2|C|172
8Z70|1|2|A|173
8Z70|1|2|U|174
8Z70|1|2|G|175
8Z70|1|2|C|176
8Z70|1|2|U|177
8Z70|1|2|U|178
8Z70|1|2|A|179
8Z70|1|2|A|180
8Z70|1|2|A|181
8Z70|1|2|A|182
*
8Z70|1|2|U|203
8Z70|1|2|G|204
*
8Z70|1|2|C|263
8Z70|1|2|G|264
8Z70|1|2|A|265
8Z70|1|2|A|266
8Z70|1|2|U|267
*
8Z70|1|2|A|288
8Z70|1|2|U|289
8Z70|1|2|G|290
8Z70|1|2|G|291
8Z70|1|2|U|292
8Z70|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A