J5_8Z70_007
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8Z70|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Z70_007 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0915
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z70|1|A|A|20
8Z70|1|A|G|21
8Z70|1|A|G|22
*
8Z70|1|C|C|35
8Z70|1|C|G|36
8Z70|1|C|A|37
8Z70|1|C|U|38
8Z70|1|C|G|39
8Z70|1|C|A|40
8Z70|1|C|A|41
8Z70|1|C|G|42
*
8Z70|1|C|U|102
8Z70|1|C|G|103
8Z70|1|C|A|104
8Z70|1|C|A|105
8Z70|1|C|C|106
8Z70|1|C|G|107
*
8Z70|1|C|C|115
8Z70|1|C|G|116
*
8Z70|1|C|C|137
8Z70|1|C|A|138
8Z70|1|C|U|139
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- Large ribosomal subunit protein uL29A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
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