J5_8Z70_012

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8Z70|1|A|A|2404, 8Z70|1|A|A|2817, 8Z70|1|A|U|2873, 8Z70|1|A|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z70|1|A|A|2399
8Z70|1|A|G|2400
8Z70|1|A|A|2401
8Z70|1|A|A|2402
8Z70|1|A|G|2403
8Z70|1|A|A|2404
8Z70|1|A|C|2405
8Z70|1|A|C|2406
*
8Z70|1|A|G|2815
8Z70|1|A|G|2816
8Z70|1|A|A|2817
8Z70|1|A|U|2818
8Z70|1|A|A|2819
8Z70|1|A|A|2820
8Z70|1|A|C|2821
8Z70|1|A|U|2822
8Z70|1|A|G|2823
*
8Z70|1|A|C|2867
8Z70|1|A|U|2868
8Z70|1|A|U|2869
8Z70|1|A|C|2870
8Z70|1|A|G|2871
8Z70|1|A|A|2872
8Z70|1|A|U|2873
8Z70|1|A|G|2874
8Z70|1|A|U|2875
8Z70|1|A|C|2876
*
8Z70|1|A|G|2951
8Z70|1|A|G|2952
8Z70|1|A|U|2953
8Z70|1|A|U|2954
8Z70|1|A|U|2955
8Z70|1|A|A|2956
8Z70|1|A|G|2957
*
8Z70|1|A|U|2975
8Z70|1|A|A|2976
8Z70|1|A|G|2977
8Z70|1|A|U|2978
8Z70|1|A|U|2979
8Z70|1|A|U|2980

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain E

Large ribosomal subunit protein uL3

Chain F

Large ribosomal subunit protein uL4A

Chain L

Large ribosomal subunit protein uL16

Chain d

Large ribosomal subunit protein eL29

Chain t

Transfer RNA; tRNA