J5_8Z71_005

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

8Z71|1|2|U|128, 8Z71|1|2|U|132, 8Z71|1|2|U|134, 8Z71|1|2|A|135, 8Z71|1|2|A|140, 8Z71|1|2|U|141, 8Z71|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|2|A|124
8Z71|1|2|U|125
8Z71|1|2|A|126
8Z71|1|2|G|127
8Z71|1|2|U|128
8Z71|1|2|U|129
8Z71|1|2|C|130
8Z71|1|2|C|131
8Z71|1|2|U|132
8Z71|1|2|U|133
8Z71|1|2|U|134
8Z71|1|2|A|135
8Z71|1|2|C|136
8Z71|1|2|U|137
8Z71|1|2|A|138
8Z71|1|2|C|139
8Z71|1|2|A|140
8Z71|1|2|U|141
8Z71|1|2|G|142
8Z71|1|2|G|143
*
8Z71|1|2|C|172
8Z71|1|2|A|173
8Z71|1|2|U|174
8Z71|1|2|G|175
8Z71|1|2|C|176
8Z71|1|2|U|177
8Z71|1|2|U|178
8Z71|1|2|A|179
8Z71|1|2|A|180
8Z71|1|2|A|181
8Z71|1|2|A|182
*
8Z71|1|2|U|203
8Z71|1|2|G|204
*
8Z71|1|2|C|263
8Z71|1|2|G|264
8Z71|1|2|A|265
8Z71|1|2|A|266
8Z71|1|2|U|267
*
8Z71|1|2|A|288
8Z71|1|2|U|289
8Z71|1|2|G|290
8Z71|1|2|G|291
8Z71|1|2|U|292
8Z71|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A