J5_8Z71_008
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8Z71|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|A|G|658
8Z71|1|A|G|659
8Z71|1|A|A|660
8Z71|1|A|G|661
8Z71|1|A|U|662
8Z71|1|A|C|663
*
8Z71|1|A|G|799
8Z71|1|A|G|800
8Z71|1|A|A|801
8Z71|1|A|C|802
*
8Z71|1|A|G|941
8Z71|1|A|U|942
8Z71|1|A|U|943
8Z71|1|A|C|944
*
8Z71|1|A|G|1375
8Z71|1|A|C|1376
*
8Z71|1|A|G|1431
8Z71|1|A|C|1432
8Z71|1|A|A|1433
8Z71|1|A|G|1434
8Z71|1|A|A|1435
8Z71|1|A|U|1436
8Z71|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
- Chain g
- Large ribosomal subunit protein eL32
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