J5_8Z71_016
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 8Z71|1|2|U|639, 8Z71|1|2|U|694, 8Z71|1|2|C|696, 8Z71|1|2|C|697, 8Z71|1|2|U|742, 8Z71|1|2|U|813, 8Z71|1|2|G|815, 8Z71|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|2|A|636
8Z71|1|2|C|637
8Z71|1|2|U|638
8Z71|1|2|U|639
8Z71|1|2|U|640
8Z71|1|2|G|641
*
8Z71|1|2|U|693
8Z71|1|2|U|694
8Z71|1|2|U|695
8Z71|1|2|C|696
8Z71|1|2|C|697
8Z71|1|2|U|698
8Z71|1|2|U|699
*
8Z71|1|2|G|739
8Z71|1|2|A|740
8Z71|1|2|C|741
8Z71|1|2|U|742
8Z71|1|2|U|743
8Z71|1|2|U|744
*
8Z71|1|2|A|807
8Z71|1|2|U|808
8Z71|1|2|A|809
8Z71|1|2|G|810
8Z71|1|2|A|811
8Z71|1|2|A|812
8Z71|1|2|U|813
8Z71|1|2|A|814
8Z71|1|2|G|815
8Z71|1|2|G|816
8Z71|1|2|A|817
*
8Z71|1|2|U|854
8Z71|1|2|A|855
8Z71|1|2|A|856
8Z71|1|2|U|857
8Z71|1|2|G|858
8Z71|1|2|A|859
8Z71|1|2|U|860
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain T
- Large ribosomal subunit protein eL19A
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