J5_8ZDB_004

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGCUCG*CGGG*UG*CCG*CGA

Length

19 nucleotides

Bulged bases

8ZDB|1|2|G|126, 8ZDB|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDB|1|2|U|124
8ZDB|1|2|C|125
8ZDB|1|2|G|126
8ZDB|1|2|C|127
8ZDB|1|2|U|128
8ZDB|1|2|C|129
8ZDB|1|2|G|130
*
8ZDB|1|2|C|182
8ZDB|1|2|G|183
8ZDB|1|2|G|184
8ZDB|1|2|G|185
*
8ZDB|1|2|U|214
8ZDB|1|2|G|215
*
8ZDB|1|2|C|310
8ZDB|1|2|C|311
8ZDB|1|2|G|312
*
8ZDB|1|2|C|337
8ZDB|1|2|G|338
8ZDB|1|2|A|339

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8