J5_8ZDD_002

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

8ZDD|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDD|1|2|C|30
8ZDD|1|2|U|31
8ZDD|1|2|U|32
8ZDD|1|2|G|33
8ZDD|1|2|U|34
*
8ZDD|1|2|A|521
8ZDD|1|2|A|522
8ZDD|1|2|A|523
8ZDD|1|2|U|524
8ZDD|1|2|A|525
8ZDD|1|2|A|526
8ZDD|1|2|C|527
*
8ZDD|1|2|G|558
8ZDD|1|2|G|559
8ZDD|1|2|A|560
8ZDD|1|2|A|561
8ZDD|1|2|U|562
8ZDD|1|2|G|563
8ZDD|1|2|A|564
8ZDD|1|2|G|565
*
8ZDD|1|2|C|585
8ZDD|1|2|G|586
8ZDD|1|2|A|587
8ZDD|1|2|G|588
8ZDD|1|2|G|589
8ZDD|1|2|A|590
8ZDD|1|2|U|591
8ZDD|1|2|C|592
8ZDD|1|2|C|593
8ZDD|1|2|A|594
8ZDD|1|2|U|595
*
8ZDD|1|2|A|641
8ZDD|1|2|U|642
8ZDD|1|2|A|643
8ZDD|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain p

Serine/threonine-protein kinase RIO3

Chain u

Pre-rRNA-processing protein TSR1 homolog