J5_8ZDD_004

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCUCG*CGGG*UG*CCG*CG

Length

17 nucleotides

Bulged bases

8ZDD|1|2|G|126, 8ZDD|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDD|1|2|C|125
8ZDD|1|2|G|126
8ZDD|1|2|C|127
8ZDD|1|2|U|128
8ZDD|1|2|C|129
8ZDD|1|2|G|130
*
8ZDD|1|2|C|182
8ZDD|1|2|G|183
8ZDD|1|2|G|184
8ZDD|1|2|G|185
*
8ZDD|1|2|U|214
8ZDD|1|2|G|215
*
8ZDD|1|2|C|310
8ZDD|1|2|C|311
8ZDD|1|2|G|312
*
8ZDD|1|2|C|337
8ZDD|1|2|G|338

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8