J5_8ZFF_008
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 8ZFF|1|a|A|2062, 8ZFF|1|a|A|2448, 8ZFF|1|a|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFF|1|a|G|2057
8ZFF|1|a|A|2058
8ZFF|1|a|A|2059
8ZFF|1|a|A|2060
8ZFF|1|a|G|2061
8ZFF|1|a|A|2062
8ZFF|1|a|C|2063
8ZFF|1|a|C|2064
*
8ZFF|1|a|G|2446
8ZFF|1|a|G|2447
8ZFF|1|a|A|2448
8ZFF|1|a|H2U|2449
8ZFF|1|a|A|2450
8ZFF|1|a|A|2451
8ZFF|1|a|C|2452
8ZFF|1|a|A|2453
*
8ZFF|1|a|U|2500
8ZFF|1|a|C|2501
8ZFF|1|a|G|2502
8ZFF|1|a|2MA|2503
8ZFF|1|a|PSU|2504
8ZFF|1|a|G|2505
8ZFF|1|a|U|2506
*
8ZFF|1|a|G|2583
8ZFF|1|a|U|2584
8ZFF|1|a|U|2585
8ZFF|1|a|U|2586
8ZFF|1|a|A|2587
8ZFF|1|a|G|2588
*
8ZFF|1|a|C|2606
8ZFF|1|a|G|2607
8ZFF|1|a|G|2608
8ZFF|1|a|U|2609
8ZFF|1|a|C|2610
8ZFF|1|a|C|2611
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: