J5_8ZFI_008
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUAGGCAAAAUGG*CG*UC*GAUACCAGC*GGCUGU
- Length
- 33 nucleotides
- Bulged bases
- 8ZFI|1|b|U|1758, 8ZFI|1|b|G|1763, 8ZFI|1|b|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|b|A|1669
8ZFI|1|b|C|1670
8ZFI|1|b|U|1671
8ZFI|1|b|A|1672
8ZFI|1|b|G|1673
8ZFI|1|b|G|1674
8ZFI|1|b|C|1675
8ZFI|1|b|A|1676
8ZFI|1|b|A|1677
8ZFI|1|b|A|1678
8ZFI|1|b|A|1679
8ZFI|1|b|U|1680
8ZFI|1|b|G|1681
8ZFI|1|b|G|1682
*
8ZFI|1|b|C|1706
8ZFI|1|b|G|1707
*
8ZFI|1|b|U|1751
8ZFI|1|b|C|1752
*
8ZFI|1|b|G|1756
8ZFI|1|b|A|1757
8ZFI|1|b|U|1758
8ZFI|1|b|A|1759
8ZFI|1|b|C|1760
8ZFI|1|b|C|1761
8ZFI|1|b|A|1762
8ZFI|1|b|G|1763
8ZFI|1|b|C|1764
*
8ZFI|1|b|G|1988
8ZFI|1|b|G|1989
8ZFI|1|b|C|1990
8ZFI|1|b|U|1991
8ZFI|1|b|G|1992
8ZFI|1|b|U|1993
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L14
- Chain q
- 50S ribosomal protein L19
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