J5_8ZHB_002
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8ZHB|1|LA|U|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZHB_002 not in the Motif Atlas
- Homologous match to J5_8CRE_002
- Geometric discrepancy: 0.0436
- The information below is about J5_8CRE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8ZHB|1|LA|G|657
8ZHB|1|LA|G|658
8ZHB|1|LA|A|659
8ZHB|1|LA|G|660
8ZHB|1|LA|U|661
8ZHB|1|LA|C|662
*
8ZHB|1|LA|G|798
8ZHB|1|LA|G|799
8ZHB|1|LA|A|800
8ZHB|1|LA|C|801
*
8ZHB|1|LA|G|940
8ZHB|1|LA|U|941
8ZHB|1|LA|U|942
8ZHB|1|LA|C|943
*
8ZHB|1|LA|G|1374
8ZHB|1|LA|C|1375
*
8ZHB|1|LA|G|1430
8ZHB|1|LA|C|1431
8ZHB|1|LA|A|1432
8ZHB|1|LA|G|1433
8ZHB|1|LA|A|1434
8ZHB|1|LA|U|1435
8ZHB|1|LA|C|1436
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lg
- Large ribosomal subunit protein eL32
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