J5_8ZHB_008
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 8ZHB|1|S2|G|510, 8ZHB|1|S2|G|539, 8ZHB|1|S2|G|540, 8ZHB|1|S2|A|541, 8ZHB|1|S2|A|542, 8ZHB|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|S2|C|31
8ZHB|1|S2|U|32
8ZHB|1|S2|U|33
8ZHB|1|S2|G|34
8ZHB|1|S2|U|35
*
8ZHB|1|S2|A|473
8ZHB|1|S2|A|474
8ZHB|1|S2|A|475
8ZHB|1|S2|U|476
8ZHB|1|S2|A|477
8ZHB|1|S2|A|478
8ZHB|1|S2|C|479
*
8ZHB|1|S2|G|509
8ZHB|1|S2|G|510
8ZHB|1|S2|A|511
8ZHB|1|S2|A|512
8ZHB|1|S2|U|513
8ZHB|1|S2|G|514
8ZHB|1|S2|A|515
8ZHB|1|S2|G|516
*
8ZHB|1|S2|C|536
8ZHB|1|S2|G|537
8ZHB|1|S2|A|538
8ZHB|1|S2|G|539
8ZHB|1|S2|G|540
8ZHB|1|S2|A|541
8ZHB|1|S2|A|542
8ZHB|1|S2|C|543
8ZHB|1|S2|A|544
8ZHB|1|S2|A|545
8ZHB|1|S2|U|546
*
8ZHB|1|S2|A|592
8ZHB|1|S2|U|593
8ZHB|1|S2|A|594
8ZHB|1|S2|G|595
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
Coloring options: