J5_8ZHB_010
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
- Length
- 41 nucleotides
- Bulged bases
- 8ZHB|1|S2|U|125, 8ZHB|1|S2|G|127, 8ZHB|1|S2|C|130, 8ZHB|1|S2|C|131, 8ZHB|1|S2|U|132, 8ZHB|1|S2|U|133, 8ZHB|1|S2|U|134, 8ZHB|1|S2|A|135, 8ZHB|1|S2|C|136, 8ZHB|1|S2|U|137, 8ZHB|1|S2|A|138, 8ZHB|1|S2|A|140, 8ZHB|1|S2|U|177, 8ZHB|1|S2|A|179, 8ZHB|1|S2|A|180
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|S2|A|124
8ZHB|1|S2|U|125
8ZHB|1|S2|A|126
8ZHB|1|S2|G|127
8ZHB|1|S2|U|128
8ZHB|1|S2|U|129
8ZHB|1|S2|C|130
8ZHB|1|S2|C|131
8ZHB|1|S2|U|132
8ZHB|1|S2|U|133
8ZHB|1|S2|U|134
8ZHB|1|S2|A|135
8ZHB|1|S2|C|136
8ZHB|1|S2|U|137
8ZHB|1|S2|A|138
8ZHB|1|S2|C|139
8ZHB|1|S2|A|140
8ZHB|1|S2|U|141
8ZHB|1|S2|G|142
8ZHB|1|S2|G|143
*
8ZHB|1|S2|C|172
8ZHB|1|S2|A|173
8ZHB|1|S2|U|174
8ZHB|1|S2|G|175
8ZHB|1|S2|C|176
8ZHB|1|S2|U|177
8ZHB|1|S2|U|178
8ZHB|1|S2|A|179
8ZHB|1|S2|A|180
8ZHB|1|S2|A|181
8ZHB|1|S2|A|182
*
8ZHB|1|S2|U|203
8ZHB|1|S2|G|204
*
8ZHB|1|S2|C|263
8ZHB|1|S2|G|264
8ZHB|1|S2|A|265
*
8ZHB|1|S2|U|289
8ZHB|1|S2|G|290
8ZHB|1|S2|G|291
8ZHB|1|S2|U|292
8ZHB|1|S2|U|293
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
Coloring options: