J5_8ZTU_008

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8ZTU|1|a|A|2448, 8ZTU|1|a|H2U|2449, 8ZTU|1|a|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZTU|1|a|G|2057
8ZTU|1|a|A|2058
8ZTU|1|a|A|2059
8ZTU|1|a|A|2060
8ZTU|1|a|G|2061
8ZTU|1|a|A|2062
8ZTU|1|a|C|2063
8ZTU|1|a|C|2064
*
8ZTU|1|a|G|2446
8ZTU|1|a|G|2447
8ZTU|1|a|A|2448
8ZTU|1|a|H2U|2449
8ZTU|1|a|A|2450
8ZTU|1|a|A|2451
8ZTU|1|a|C|2452
8ZTU|1|a|A|2453
*
8ZTU|1|a|U|2500
8ZTU|1|a|C|2501
8ZTU|1|a|G|2502
8ZTU|1|a|2MA|2503
8ZTU|1|a|PSU|2504
8ZTU|1|a|G|2505
8ZTU|1|a|U|2506
8ZTU|1|a|C|2507
*
8ZTU|1|a|G|2582
8ZTU|1|a|G|2583
8ZTU|1|a|U|2584
8ZTU|1|a|U|2585
8ZTU|1|a|U|2586
8ZTU|1|a|A|2587
8ZTU|1|a|G|2588
*
8ZTU|1|a|C|2606
8ZTU|1|a|G|2607
8ZTU|1|a|G|2608
8ZTU|1|a|U|2609
8ZTU|1|a|C|2610
8ZTU|1|a|C|2611

Current chains

Chain a

23S rRNA

Nearby chains

Chain W

PepNL

Chain Y

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain d

50S ribosomal protein L3

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain l

50S ribosomal protein L16

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32