J5_9AX8_005
3D structure
- PDB id
- 9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 9AX8|1|A|A|2062, 9AX8|1|A|A|2448, 9AX8|1|A|U|2449, 9AX8|1|A|U|2506, 9AX8|1|A|U|2585, 9AX8|1|A|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9AX8|1|A|G|2057
9AX8|1|A|A|2058
9AX8|1|A|A|2059
9AX8|1|A|A|2060
9AX8|1|A|G|2061
9AX8|1|A|A|2062
9AX8|1|A|C|2063
9AX8|1|A|C|2064
*
9AX8|1|A|G|2446
9AX8|1|A|G|2447
9AX8|1|A|A|2448
9AX8|1|A|U|2449
9AX8|1|A|A|2450
9AX8|1|A|A|2451
9AX8|1|A|C|2452
9AX8|1|A|A|2453
9AX8|1|A|G|2454
*
9AX8|1|A|C|2498
9AX8|1|A|C|2499
9AX8|1|A|U|2500
9AX8|1|A|C|2501
9AX8|1|A|G|2502
9AX8|1|A|A|2503
9AX8|1|A|U|2504
9AX8|1|A|G|2505
9AX8|1|A|U|2506
9AX8|1|A|C|2507
*
9AX8|1|A|G|2582
9AX8|1|A|G|2583
9AX8|1|A|U|2584
9AX8|1|A|U|2585
9AX8|1|A|U|2586
9AX8|1|A|A|2587
9AX8|1|A|G|2588
*
9AX8|1|A|C|2606
9AX8|1|A|G|2607
9AX8|1|A|G|2608
9AX8|1|A|U|2609
9AX8|1|A|C|2610
9AX8|1|A|C|2611
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L3
- Chain 5
- 50S ribosomal protein L32
- Chain 9
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
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