J5_9B00_011

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9B00|1|2A|U|272|||A, 9B00|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|2A|C|268
9B00|1|2A|U|269
9B00|1|2A|A|270
9B00|1|2A|A|271
9B00|1|2A|A|271|||A
9B00|1|2A|C|271|||B
*
9B00|1|2A|G|271|||V
9B00|1|2A|G|271|||W
9B00|1|2A|G|271|||X
9B00|1|2A|U|271|||Y
9B00|1|2A|C|271|||Z
9B00|1|2A|G|272
9B00|1|2A|U|272|||A
9B00|1|2A|G|272|||B
*
9B00|1|2A|C|366
9B00|1|2A|G|370
9B00|1|2A|A|371
9B00|1|2A|G|372
9B00|1|2A|U|373
9B00|1|2A|A|374
9B00|1|2A|C|375
*
9B00|1|2A|G|399
9B00|1|2A|G|400
9B00|1|2A|A|401
9B00|1|2A|A|402
9B00|1|2A|U|403
9B00|1|2A|C|404
9B00|1|2A|U|405
9B00|1|2A|G|406
*
9B00|1|2A|U|421
9B00|1|2A|A|422
9B00|1|2A|A|423
9B00|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9