Loop J5_9B00

3D structure

PDB id: 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9B00|1|2A|A|2448, 9B00|1|2A|U|2449, 9B00|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9B00|1|2A|A|2057
9B00|1|2A|A|2058
9B00|1|2A|A|2059
9B00|1|2A|A|2060
9B00|1|2A|G|2061
9B00|1|2A|A|2062
9B00|1|2A|C|2063
9B00|1|2A|C|2064
*
9B00|1|2A|G|2446
9B00|1|2A|G|2447
9B00|1|2A|A|2448
9B00|1|2A|U|2449
9B00|1|2A|A|2450
9B00|1|2A|A|2451
9B00|1|2A|C|2452
9B00|1|2A|A|2453
*
9B00|1|2A|U|2500
9B00|1|2A|C|2501
9B00|1|2A|G|2502
9B00|1|2A|2MA|2503
9B00|1|2A|U|2504
9B00|1|2A|G|2505
9B00|1|2A|U|2506
9B00|1|2A|C|2507
*
9B00|1|2A|G|2582
9B00|1|2A|G|2583
9B00|1|2A|U|2584
9B00|1|2A|U|2585
9B00|1|2A|C|2586
9B00|1|2A|A|2587
9B00|1|2A|G|2588
*
9B00|1|2A|C|2606
9B00|1|2A|G|2607
9B00|1|2A|G|2608
9B00|1|2A|U|2609
9B00|1|2A|C|2610
9B00|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2W: 50S ribosomal protein L22
Chain 2w: Transfer RNA; tRNA
Chain 2x: Transfer RNA; tRNA

J5_9B00_016