Loop J5_9B0F

3D structure

PDB id: 9B0F (explore in PDB, NAKB, or RNA 3D Hub)
Description: In situ human Hibernating class3 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 9B0F|1|L5|A|3908, 9B0F|1|L5|A|4394, 9B0F|1|L5|G|4451, 9B0F|1|L5|U|4555, 9B0F|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9B0F|1|L5|A|3902
9B0F|1|L5|A|3903
9B0F|1|L5|G|3904
9B0F|1|L5|A|3905
9B0F|1|L5|A|3906
9B0F|1|L5|G|3907
9B0F|1|L5|A|3908
9B0F|1|L5|C|3909
9B0F|1|L5|C|3910
*
9B0F|1|L5|G|4392
9B0F|1|L5|G|4393
9B0F|1|L5|A|4394
9B0F|1|L5|U|4395
9B0F|1|L5|A|4396
9B0F|1|L5|A|4397
9B0F|1|L5|C|4398
9B0F|1|L5|U|4399
9B0F|1|L5|G|4400
*
9B0F|1|L5|C|4444
9B0F|1|L5|U|4445
9B0F|1|L5|U|4446
9B0F|1|L5|C|4447
9B0F|1|L5|G|4448
9B0F|1|L5|A|4449
9B0F|1|L5|U|4450
9B0F|1|L5|G|4451
9B0F|1|L5|U|4452
9B0F|1|L5|C|4453
*
9B0F|1|L5|G|4528
9B0F|1|L5|G|4529
9B0F|1|L5|U|4530
9B0F|1|L5|U|4531
9B0F|1|L5|U|4532
9B0F|1|L5|A|4533
9B0F|1|L5|G|4534
*
9B0F|1|L5|U|4552
9B0F|1|L5|A|4553
9B0F|1|L5|G|4554
9B0F|1|L5|U|4555
9B0F|1|L5|U|4556
9B0F|1|L5|U|4557
9B0F|1|L5|U|4558

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: Large ribosomal subunit protein uL3
Chain LC: 60S ribosomal protein L4
Chain LP: 60S ribosomal protein L17
Chain Lb: Large ribosomal subunit protein eL29

J5_9B0F_005