J5_9B0N_008

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

9B0N|1|S2|G|126, 9B0N|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0N|1|S2|C|125
9B0N|1|S2|G|126
9B0N|1|S2|C|127
9B0N|1|S2|U|128
9B0N|1|S2|C|129
*
9B0N|1|S2|G|183
9B0N|1|S2|G|184
9B0N|1|S2|G|185
*
9B0N|1|S2|U|214
9B0N|1|S2|G|215
*
9B0N|1|S2|C|310
9B0N|1|S2|C|311
9B0N|1|S2|G|312
*
9B0N|1|S2|C|337
9B0N|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8